LATE-PCR
The basic principle of LATE-PCR involves the amplification of only one side of a DNA duplex, resulting in a high proportion of single strandeded DNA, which allows probing over a much wider temperature range (and thus a greater degree of mutlpiexing) than is possible with symmetric PCR.
The use of single stranded DNA amplicons provides a number of other advantages:
• Separation of Annealing and Detection (faster thermocycling)
• Larger Detection “Temperature Space” (more multiplexed assays)
• Easier to Design Low-Tm Probes (more multiplexing and faster thermocycling)
• Substantial Increase in Allele Discrimination (better integrity of amplification)
• Substantial Decrease in Background Fluorescence (better sensitivity)
• Probe/Target Saturation - Higher Signal, no Inhibition of Amplification (faster thermocycling and better sensitivity)
• Linear Kinetics with little scatter among replicates providing Quantitative Endpoint Analysis
LATE-PCR reduces mispriming while maintaining amplification efficiency.
LATE-PCR is further enhanced by additional technologies that improve sample preparation, suppress amplification errors, improve probe design for rapid high-resolution analysis of the amplified product, make multiplexing easier, allow for rapid DNA sequencing, and enhances data analysis.
To learn more about LATE-PCR and the Wangh Laboratory and Brandeis University please visit http://www.brandeis.edu/projects/wanghlab/
Selected Publications
John E Rice, J Aquiles Sanchez, Kenneth E Pierce, Arthur H Reis Jr. Adam Osborne & Lawrence Wangh (2007) Monoplex/multiplex linear-after-the-exponential-PCR assays combined with PrimeSafe and Dilute-'N'-Go sequencing. Nature Protocols, 2(10):2429-2438.
Pierce, K.E., Sanchez, J.A., Rice, J.E., and Wangh, L.J. (2005) Linear-After-The-Exponential (LATE)-PCR: Primer design criteria for high yields of specific single-stranded DNA and improved real-time detection, Proc Natl Acad Sci USA, 102:8609-8614.
Sanchez, J.A., Pierce, K.E., Rice, J.E., and Wangh, L.J. (2004) Linear-After-The-Exponential (LATE)-PCR: An advanced method of asymmetric PCR and its uses in quantitative real-time analysis, Proc Natl Acad Sci USA, 101(7):1933-1938.
The following chart illustrates how LATE-PCR works.
